STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU48267.1Hypothetical protein; InterPro IPR008492; KEGG: sco:SCO1662 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: PAC2 family. (285 aa)    
Predicted Functional Partners:
ADU48269.1
HAD-superfamily hydrolase, subfamily IA, variant 3; COGs: COG0637 phosphatase/phosphohexomutase; InterPro IPR005834: IPR006402; KEGG: bcv:Bcav_2245 HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: Hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED.
 
     0.680
ADU48268.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
     
 0.663
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.649
ADU49848.1
Putative F420-dependent enzyme; InterPro IPR019967: IPR011576; KEGG: svi:Svir_19860 pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; SPTR: Pyridoxamine 5'-phosphate oxidase family protein; TIGRFAM: putative F420-dependent enzyme; PFAM: Pyridoxamine 5'-phosphate oxidase; TIGRFAM: PPOX class probable F420-dependent enzyme, Rv0121 family.
  
    0.556
ADU49297.1
Hypothetical protein; InterPro IPR016709; KEGG: aau:AAur_3002 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: MaoC like domain; Belongs to the UPF0336 family.
  
     0.524
ADU49296.1
MaoC domain protein dehydratase; COGs: COG2030 Acyl dehydratase; InterPro IPR002539; KEGG: sco:SCO4637 hypothetical protein; PFAM: MaoC domain protein dehydratase; SPTR: Putative uncharacterized protein; PFAM: MaoC like domain.
  
     0.518
ADU48290.1
COGs: COG2378 transcriptional regulator protein; KEGG: kra:Krad_1879 transcriptional regulator-like; SPTR: Transcriptional regulator-like protein.
 
     0.503
ADU48494.1
Menaquinol-cytochrome c reductase cytochrome c1 subunit precursor; InterPro IPR003088: IPR009152: IPR009056; KEGG: kse:Ksed_16190 cytochrome c, mono- and diheme variants family; PFAM: cytochrome c class I; SPTR: Cytochrome C heme-binding subunit; PFAM: Cytochrome c.
  
     0.496
ADU48498.1
Hypothetical protein; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
  
     0.468
ADU47484.1
Putative F420-dependent enzyme; InterPro IPR019965; KEGG: rop:ROP_15660 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: putative F420-dependent enzyme; TIGRFAM: PPOX class probable F420-dependent enzyme, Rv2061 family.
   
    0.465
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.