STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU48387.1Tetratricopeptide repeat; InterPro IPR019734: IPR013026; KEGG: ahe:Arch_1473 tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat; SPTR: Tetratricopeptide TPR_2 repeat protein. (289 aa)    
Predicted Functional Partners:
ADU48379.1
COGs: COG3303 Formate-dependent nitrite reductase periplasmic cytochrome c552 subunit; InterPro IPR003321: IPR011031; KEGG: ahe:Arch_1474 nitrite reductase (cytochrome; ammonia-forming); PFAM: cytochrome c552; PRIAM: Nitrite reductase (cytochrome; ammonia-forming); SPTR: Nitrite reductase (Cytochrome; ammonia-forming); PFAM: Cytochrome c552; Belongs to the cytochrome c-552 family.
 
   
 0.683
ADU48385.1
COGs: COG1333 ResB protein required for cytochrome c biosynthesis; KEGG: ahe:Arch_1471 ResB family protein; SPTR: ResB family protein; PFAM: ResB-like family.
 
     0.648
ADU48386.1
COGs: COG0785 Cytochrome c biogenesis protein; InterPro IPR003834; KEGG: ahe:Arch_1472 cytochrome c biogenesis protein transmembrane region; PFAM: cytochrome c biogenesis protein transmembrane region; SPTR: Cytochrome c biogenesis protein transmembrane region; PFAM: Cytochrome C biogenesis protein transmembrane region.
       0.640
ADU49556.1
COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; InterProIPR017896: IPR011895: IPR002880: IPR019752: IPR 019456: IPR011766: IPR017900; KEGG: mmi:MMAR_3408 pyruvate ferredoxin/flavodoxin oxidoreductase family protein; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; Pyruvate-flavodoxin oxidoreductase, EKR domain; thiamine pyrophosphate TPP-binding domain-containing protein; SPTR: Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; TIGRFAM [...]
 
     0.623
ADU48380.1
COGs: COG3005 Nitrate/TMAO reductase membrane-bound tetraheme cytochrome c subunit; InterPro IPR017571: IPR011031; KEGG: ahe:Arch_1475 cytochrome c nitrate reductase, small subunit; SPTR: Cytochrome c nitrate reductase, small subunit; TIGRFAM: cytochrome c nitrate reductase, small subunit; PFAM: NapC/NirT cytochrome c family, N-terminal region; TIGRFAM: cytochrome c nitrate reductase, small subunit.
 
     0.620
ADU48384.1
COGs: COG0755 ABC-type transport system involved in cytochrome c biogenesis permease component; InterPro IPR002541: IPR017562; KEGG: ahe:Arch_1470 cytochrome c-type biogenesis protein CcsB; PFAM: cytochrome c assembly protein; SPTR: Cytochrome c-type biogenesis protein CcsB; TIGRFAM: cytochrome c-type biogenesis protein CcsB; PFAM: Cytochrome C assembly protein; TIGRFAM: cytochrome c-type biogenesis protein CcsB.
 
  
 0.613
ADU48383.1
COGs: COG1225 Peroxiredoxin; InterPro IPR000866: IPR017936; KEGG: ahe:Arch_1469 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; PFAM: AhpC/TSA family.
 
     0.509
ADU48391.1
InterPro IPR001440: IPR019734: IPR013026; KEGG: cyp:PCC8801_1300 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: TPR repeat-containing protein; PFAM: Tetratricopeptide repeat.
 
 
 0.492
ADU48388.1
Cytochrome C family protein; InterPro IPR010177: IPR011031; KEGG: rfr:Rfer_0259 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: cytochrome C family protein; PFAM: Doubled CXXCH motif (Paired_CXXCH_1); TIGRFAM: doubled CXXCH domain.
     
 0.490
ADU48382.1
NapC/NirT cytochrome c domain protein; InterPro IPR005126: IPR011031; KEGG: gem:GM21_1063 hypothetical protein; PFAM: NapC/NirT cytochrome c domain protein; SPTR: Putative uncharacterized protein; PFAM: NapC/NirT cytochrome c family, N-terminal region.
 
     0.461
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
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