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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU48422.1KEGG: bcv:Bcav_1965 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3000). (216 aa)    
Predicted Functional Partners:
ADU48423.1
3'-5' exonuclease; COGs: COG0349 Ribonuclease D; InterPro IPR002562: IPR002121: IPR018312; KEGG: sma:SAV_2231 ribonuclease D; PFAM: 3'-5' exonuclease; HRDC domain protein; SMART: 3'-5' exonuclease; HRDC domain protein; SPTR: Putative ribonuclease D; PFAM: 3'-5' exonuclease; HRDC domain; TIGRFAM: ribonuclease D.
 
    0.945
ADU48447.1
KEGG: bcv:Bcav_1935 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.736
ADU48328.1
Regulatory protein MerR; InterPro IPR000551; KEGG: aau:AAur_1684 hypothetical protein; SMART: regulatory protein MerR; SPTR: Putative uncharacterized protein.
  
     0.726
ADU48537.1
KEGG: kra:Krad_3289 integral membrane protein; SPTR: Integral membrane protein.
  
     0.716
ADU48580.1
KEGG: aau:AAur_2439 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3145).
  
     0.716
ADU48461.1
KEGG: sro:Sros_7085 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.694
ADU48420.1
COGs: COG0728 membrane protein putative virulence factor; InterPro IPR004268; KEGG: kse:Ksed_26920 integral membrane protein MviN; PFAM: virulence factor MVIN family protein; SPTR: Integral membrane protein MviN; TIGRFAM: integral membrane protein MviN; PFAM: MviN-like protein; TIGRFAM: integral membrane protein MviN.
 
     0.677
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
       0.669
whiA
Protein of unknown function DUF199; Involved in cell division and chromosome segregation.
  
     0.652
ADU48417.1
Chlorite dismutase; COGs: COG3253 conserved hypothetical protein; InterPro IPR010644; KEGG: kfl:Kfla_3727 chlorite dismutase; PFAM: Chlorite dismutase; SPTR: Putative uncharacterized protein; PFAM: Chlorite dismutase.
 
     0.639
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
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