STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU48551.1COGs: COG2220 Zn-dependent hydrolase of the beta-lactamase fold; KEGG: kra:Krad_4081 putative Zn-dependent hydrolase; SPTR: Putative uncharacterized protein; PFAM: Metallo-beta-lactamase superfamily. (217 aa)    
Predicted Functional Partners:
ADU48552.1
Major facilitator superfamily MFS_1; COGs: COG2814 Arabinose efflux permease; InterPro IPR001958: IPR011701: IPR005829: IPR000740; KEGG: kse:Ksed_04650 arabinose efflux permease family protein; PFAM: major facilitator superfamily MFS_1; SPTR: Putative multidrug resistance protein; PFAM: Sugar (and other) transporter; Major Facilitator Superfamily.
       0.773
ADU48549.1
KEGG: xce:Xcel_0944 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.715
ADU48550.1
ABC transporter related protein; COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439: IPR003593; KEGG: cfl:Cfla_0974 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related protein; PFAM: ABC transporter.
       0.715
ADU48553.1
COGs: COG3573 oxidoreductase; InterPro IPR003953: IPR014614; KEGG: rce:RC1_0236 hypothetical protein; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; SPTR: Putative uncharacterized protein; PFAM: FAD binding domain.
       0.434
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
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