STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADU48557.1Protein of unknown function DUF328; COGs: COG3022 conserved hypothetical protein; InterPro IPR005583; KEGG: kfl:Kfla_3501 protein of unknown function DUF328; PFAM: protein of unknown function DUF328; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF328); Belongs to the UPF0246 family. (250 aa)    
Predicted Functional Partners:
ADU48142.1
Major facilitator superfamily MFS_1; COGs: COG2807 Cyanate permease; InterPro IPR011701; KEGG: pae:PA1626 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: Probable MFS transporter; PFAM: Major Facilitator Superfamily.
  
    0.826
ADU48556.1
COGs: COG0557 Exoribonuclease R; InterPro IPR001900; KEGG: kse:Ksed_12120 exoribonuclease R; PFAM: ribonuclease II; SPTR: Putative ribonuclease R; PFAM: RNB domain.
 
     0.700
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
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