STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU48578.1Transcription factor WhiB; InterPro IPR003482; KEGG: cai:Caci_7795 transcription factor WhiB; PFAM: transcription factor WhiB; SPTR: Transcription factor WhiB; PFAM: Transcription factor WhiB. (122 aa)    
Predicted Functional Partners:
ADU48579.1
HNH endonuclease; COGs: COG1403 Restriction endonuclease; InterPro IPR002711: IPR003615; KEGG: kfl:Kfla_6715 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: HNH endonuclease; PFAM: HNH endonuclease.
 
     0.824
whiB-7
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.755
whiB-6
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.748
ADU48577.1
Protein of unknown function UPF0027; COGs: COG1690 conserved hypothetical protein; InterPro IPR001233; KEGG: pfr:PFREUD_23600 hypothetical protein; PFAM: protein of unknown function UPF0027; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized protein family UPF0027.
       0.498
ADU47132.1
Putative F420-dependent oxidoreductase; COGs: COG2141 Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase; InterPro IPR016048: IPR019952; KEGG: rha:RHA1_ro04019 alkanesulfonate monooxygenase; PFAM: Luciferase-like, subgroup; SPTR: Putative uncharacterized protein; TIGRFAM: putative F420-dependent oxidoreductase; PFAM: Luciferase-like monooxygenase; TIGRFAM: probable F420-dependent oxidoreductase, Rv1855c family.
  
     0.487
ADU46826.1
COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006091: IPR006090; KEGG: kse:Ksed_26500 acyl-CoA dehydrogenase; PFAM: acyl-CoA dehydrogenase domain-containing protein; SPTR: Putative acyl-CoA dehydrogenase; PFAM: Acyl-CoA dehydrogenase N terminal; Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain.
  
     0.475
ADU47167.1
Xylose isomerase domain-containing protein TIM barrel; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: fre:Franean1_6143 xylose isomerase domain-containing protein; PFAM: Xylose isomerase domain-containing protein TIM barrel; SPTR: Putative uncharacterized protein; PFAM: Xylose isomerase-like TIM barrel.
  
     0.450
ADU49706.1
InterPro IPR010093: IPR000551; KEGG: tbi:Tbis_3348 excisionase family DNA binding domain-containing protein; PFAM: regulatory protein MerR; SPTR: Excisionase/Xis, DNA-binding; TIGRFAM: DNA binding domain protein, excisionase family; PFAM: MerR family regulatory protein; TIGRFAM: DNA binding domain, excisionase family.
  
     0.448
ADU47279.1
KEGG: kra:Krad_3610 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.427
ADU48580.1
KEGG: aau:AAur_2439 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3145).
       0.409
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.