STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
ADU49128.1NAD-dependent epimerase/dehydratase; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509: IPR020904; KEGG: cef:CE0380 putative GDP-D-mannose dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: Putative GDP-D-mannose dehydratase; PFAM: NAD dependent epimerase/dehydratase family. (314 aa)    
Predicted Functional Partners:
ADU49129.1
O-antigen polymerase; InterPro IPR007016; KEGG: scb:SCAB_83101 hypothetical protein; PFAM: O-antigen polymerase; SPTR: Putative uncharacterized protein; PFAM: O-Antigen ligase.
       0.744
ADU49135.1
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: rca:Rcas_1346 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: Putative galactosyltransferase; PFAM: Glycosyl transferases group 1.
  
    0.739
ADU49131.1
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: tma:TM0622 lipopolysaccharide biosynthesis protein, putative; PFAM: glycosyl transferase group 1; SPTR: Lipopolysaccharide biosynthesis protein; PFAM: Glycosyl transferases group 1.
  
    0.738
ADU49127.1
2-nitropropane dioxygenase-like protein; KEGG: rmu:RMDY18_15750 dioxygenase related to 2-nitropropane dioxygenase; SPTR: Putative uncharacterized protein.
 
     0.688
rpsC
SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
   
  0.641
rpsS
SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.636
ADU49134.1
Lipopolysaccharide biosynthesis protein; COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR003856; KEGG: cfl:Cfla_0897 capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein; SPTR: Putative uncharacterized protein; PFAM: Chain length determinant protein; CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family.
 
  
 0.624
rpsQ
SSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
  0.620
ADU49136.1
ABC transporter related protein; COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR003439: IPR017940: IPR003593: IPR017871; KEGG: mrd:Mrad2831_5367 lipid ABC transporter ATPase/inner membrane protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter, ATP-binding/permease protein; PFAM: ABC transporter.
  
     0.618
rpsL
SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
   
 0.604
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
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