STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU49401.1Transglycosylase-like domain protein; InterPro IPR002482: IPR010618: IPR018392; KEGG: cai:Caci_5954 transglycosylase domain protein; PFAM: Transglycosylase-like domain protein; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; SPTR: Putative uncharacterized protein; PFAM: Transglycosylase-like domain; LysM domain. (226 aa)    
Predicted Functional Partners:
ADU50112.1
Cell wall hydrolase/autolysin; COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002477: IPR002508; KEGG: kfl:Kfla_7065 cell wall hydrolase/autolysin; PFAM: cell wall hydrolase/autolysin; Peptidoglycan-binding domain 1 protein; SMART: cell wall hydrolase/autolysin; SPTR: Cell wall hydrolase/autolysin; PFAM: Putative peptidoglycan binding domain; N-acetylmuramoyl-L-alanine amidase.
 
  
 0.556
whiB-3
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.438
ADU50091.1
COGs: COG5650 integral membrane protein; KEGG: kra:Krad_4340 integral membrane protein; SPTR: Putative transmembrane protein; PFAM: Protein of unknown function (DUF2029).
  
     0.412
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
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