STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU49530.1Transcriptional regulator, GntR family; COGs: COG2186 Transcriptional regulators; InterPro IPR000524: IPR011711; KEGG: sen:SACE_3859 GntR family transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: GntR-family transcriptional regulator; PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (242 aa)    
Predicted Functional Partners:
ADU48344.1
Transcriptional regulator, GntR family; COGs: COG1802 Transcriptional regulators; InterPro IPR000524: IPR011711; KEGG: pzu:PHZ_c2130 transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: Transcriptional regulator, GntR family; PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
 
  
 0.731
ADU49529.1
L-carnitine dehydratase/bile acid-inducible protein F; COGs: COG1804 acyl-CoA transferase/carnitine dehydratase; InterPro IPR003673; KEGG: tro:trd_1364 protein C7orf10; PFAM: L-carnitine dehydratase/bile acid-inducible protein F; SPTR: Protein C7orf10; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family.
  
    0.553
ADU49524.1
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family; COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003593: IPR003439: IPR017871; KEGG: kcr:Kcr_0825 ABC-type branched-chain amino acid transport system, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC-type branched-chain amino acid transport system, ATPase component; PFAM: ABC transporter.
       0.542
ADU49525.1
Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family; COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003593: IPR003439; KEGG: hvo:HVO_A0579 ABC-type transport system ATP-binding protein (probable substrate branched-chain amino acids); PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC-type transport system ATP-binding protein (Probable substrate branched-chain amino acids); PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter.
       0.542
ADU49526.1
Inner-membrane translocator; COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; InterPro IPR001851; KEGG: ade:Adeh_2426 ABC branched-chain amino acid transporter, inner membrane subunit; PFAM: inner-membrane translocator; SPTR: Branched-chain amino acid ABC superfamily ATP binding cassette transporter, permease protein; PFAM: Branched-chain amino acid transport system / permease component.
       0.542
ADU49527.1
Inner-membrane translocator; COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; InterPro IPR001851; KEGG: ank:AnaeK_1438 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component.
       0.542
ADU49528.1
Extracellular ligand-binding receptor; COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: bpa:BPP2097 branched chain amino-acid ABC transporter substrate-binding protein; PFAM: Extracellular ligand-binding receptor; SPTR: Putative branched-chain amino acid transporter substrate-binding protein; PFAM: Receptor family ligand binding region.
       0.542
ADU49522.1
COGs: COG0777 Acetyl-CoA carboxylase beta subunit; InterPro IPR011762: IPR011763: IPR000438: IPR000022; KEGG: nca:Noca_4502 carboxyl transferase; PFAM: carboxyl transferase; SPTR: Carboxyl transferase; PFAM: Carboxyl transferase domain; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit.
  
  
 0.516
ADU49657.1
Transcriptional regulator, GntR family; COGs: COG1802 Transcriptional regulators; InterPro IPR000524: IPR011711; KEGG: cai:Caci_5914 transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; SPTR: Transcriptional regulator, GntR family; PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
 
  
 0.498
ADU49531.1
COGs: COG2159 metal-dependent hydrolase of the TIM-barrel fold; InterPro IPR006992; KEGG: tpr:Tpau_0926 amidohydrolase 2; PFAM: amidohydrolase 2; SPTR: Amidohydrolase 2; PFAM: Amidohydrolase.
       0.466
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.