STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU49614.1Integrase family protein; InterPro IPR002104; KEGG: aau:AAur_pTC10045 integrase; PFAM: integrase family protein; SPTR: Int; PFAM: Phage integrase family; Belongs to the 'phage' integrase family. (375 aa)    
Predicted Functional Partners:
ADU49613.1
DNA binding domain protein, excisionase family; InterPro IPR010093; KEGG: scb:SCAB_46971 putative excisionase; SPTR: Xis; TIGRFAM: DNA binding domain protein, excisionase family; TIGRFAM: DNA binding domain, excisionase family.
 
     0.940
ADU49610.1
DNA primase catalytic core domain; COGs: COG0358 DNA primase; InterPro IPR002694: IPR013264; KEGG: fra:Francci3_1282 DNA primase; PFAM: DNA primase catalytic core domain; SPTR: DNA primase; PFAM: DNA primase catalytic core, N-terminal domain; CHC2 zinc finger; TIGRFAM: DNA primase, catalytic core.
 
   
 0.558
ADU49611.1
KEGG: cre:CHLREDRAFT_145982 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.531
ADU49612.1
Hypothetical protein; KEGG: acp:A2cp1_3940 TPR repeat-containing protein; SPTR: TPR repeat-containing protein.
       0.531
ADU49609.1
Hypothetical protein; KEGG: rce:RC1_2420 ATP-dependent helicase MgpS; SPTR: ATP-dependent helicase MgpS.
       0.470
ADU49597.1
Transposase IS116/IS110/IS902 family protein; COGs: COG3547 Transposase and inactivated derivatives; InterPro IPR003346; KEGG: mgi:Mflv_0689 transposase IS116/IS110/IS902 family protein; PFAM: transposase IS116/IS110/IS902 family protein; SPTR: Putative IS110 family transposase; PFAM: Transposase IS116/IS110/IS902 family; Transposase.
  
     0.438
ADU46575.1
Integrase family protein; COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: fra:Francci3_4274 phage integrase; PFAM: integrase family protein; SPTR: Integrase family protein; PFAM: Phage integrase family; Belongs to the 'phage' integrase family.
 
 
 
 0.425
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
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