STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU49728.1COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; KEGG: nml:Namu_4157 acetyltransferase including N-acetylase of ribosomal protein-like protein; SPTR: Acetyltransferase including N-acetylase of ribosomal protein-like protein. (211 aa)    
Predicted Functional Partners:
purD
COGs: COG0151 Phosphoribosylamine-glycine ligase; InterProIPR011761: IPR011764: IPR000115: IPR020562: IPR 020561: IPR020560; KEGG: xce:Xcel_3134 phosphoribosylamine/glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain; PRIAM: Phosphoribosylamine--glycine ligase; SPTR: Putative phosphoribosylglycinamide synthetase; TIGRFAM: phosphoribosylamine/glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, N domain; Phosphoribosylglycinamide synthetase, ATP-grasp (A) d [...]
       0.739
purC
COGs: COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase; InterPro IPR001636; KEGG: tcu:Tcur_0194 phosphoribosylaminoimidazole-succinocarboxamides ynthase; PFAM: SAICAR synthetase; PRIAM: Phosphoribosylaminoimidazolesuccinocarboxamide synthase; SPTR: Phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase.
       0.730
ADU49729.1
COGs: COG3973 Superfamily I DNA and RNA helicase; InterPro IPR014016; KEGG: kse:Ksed_05760 DNA/RNA helicase, superfamily I; SPTR: Putative helicase protein; manually curated; PFAM: UvrD/REP helicase.
       0.562
ADU49835.1
COGs: COG2808 Transcriptional regulator; InterPro IPR018506: IPR007396: IPR011576; KEGG: cfl:Cfla_0243 FMN-binding negative transcriptional regulator; PFAM: Negative transcriptional regulator; pyridoxamine 5'-phosphate oxidase-related FMN-binding; SPTR: Transcription antitermination factor NusB; PFAM: Putative FMN-binding domain.
 
     0.524
rnc
RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.481
ADU49725.1
KEGG: kfl:Kfla_3129 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.431
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
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