STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU49751.1Protein of unknown function DUF1458; COGs: COG3360 conserved hypothetical protein; InterPro IPR009923; KEGG: ach:Achl_0494 protein of unknown function DUF1458; PFAM: protein of unknown function DUF1458; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1458). (69 aa)    
Predicted Functional Partners:
ADU49750.1
Peptidase M24; COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR017871: IPR001131: IPR000994; KEGG: amd:AMED_4873 X-Pro dipeptidase; PFAM: peptidase M24; SPTR: Peptidase M24; PFAM: Metallopeptidase family M24; Creatinase/Prolidase N-terminal domain; Belongs to the peptidase M24B family.
       0.697
ADU49543.1
CsbD family protein; InterPro IPR008462; KEGG: aau:AAur_0176 putative CsbD-like family protein; PFAM: CsbD family protein; SPTR: CsbD family protein; PFAM: CsbD-like; Belongs to the UPF0337 (CsbD) family.
   
    0.566
ADU49752.1
tRNA/rRNA methyltransferase (SpoU); COGs: COG0566 rRNA methylase; InterPro IPR001537; KEGG: tfu:Tfu_2449 tRNA/rRNA methyltransferase; PFAM: tRNA/rRNA methyltransferase (SpoU); SPTR: TRNA/rRNA methyltransferase; PFAM: SpoU rRNA Methylase family.
       0.492
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
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