STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU49756.1LemA family protein; COGs: COG1704 conserved hypothetical protein; InterPro IPR007156; KEGG: bcv:Bcav_3645 LemA family protein; PFAM: LemA family protein; SPTR: LemA family protein; PFAM: LemA family. (244 aa)    
Predicted Functional Partners:
ADU49755.1
Hypothetical protein; InterPro IPR011659; KEGG: hau:Haur_4532 serine/threonine protein kinase; SPTR: Protein tolB; PFAM: WD40-like Beta Propeller Repeat.
       0.777
ADU47817.1
InterPro IPR018702; KEGG: bcv:Bcav_2765 hypothetical protein; PFAM: Protein of unknown function DUF2207, membrane; SPTR: Putative uncharacterized protein; PFAM: Predicted membrane protein (DUF2207).
 
     0.732
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
       0.598
htpX
Heat shock protein; COGs: COG0501 Zn-dependent protease with chaperone function; InterPro IPR001915; KEGG: ach:Achl_2779 heat shock protein HtpX; PFAM: peptidase M48 Ste24p; SPTR: Heat shock protein HtpX; PFAM: Peptidase family M48; Belongs to the peptidase M48B family.
 
    0.486
ADU49758.1
Short-chain dehydrogenase/reductase SDR; COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002347: IPR002198; KEGG: ske:Sked_35320 short-chain dehydrogenase of unknown substrate specificity; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Short chain dehydrogenase; PFAM: short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.468
ADU49754.1
Triacylglycerol lipase; InterPro IPR001917: IPR017909: IPR013222: IPR005152; KEGG: amd:AMED_9107 lipase; PFAM: secretory lipase; Glycosyl hydrolase family 98 putative carbohydrate binding module; PRIAM: Triacylglycerol lipase; SMART: Glycosyl hydrolase family 98 putative carbohydrate binding module; SPTR: Acetyl esterase (Deacetylase); PFAM: NPCBM/NEW2 domain; Secretory lipase.
       0.459
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
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