STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU49821.1YbaK/prolyl-tRNA synthetase associated region; COGs: COG2606 conserved hypothetical protein; InterPro IPR007214; KEGG: nca:Noca_2641 YbaK/prolyl-tRNA synthetase associated region; PFAM: YbaK/prolyl-tRNA synthetase associated region; SPTR: YbaK/prolyl-tRNA synthetase associated region; PFAM: YbaK / prolyl-tRNA synthetases associated domain; TIGRFAM: ybaK/ebsC protein. (163 aa)    
Predicted Functional Partners:
ADU49820.1
Major facilitator superfamily MFS_1; COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: cai:Caci_4723 major facilitator superfamily MFS_1; PFAM: major facilitator superfamily MFS_1; SPTR: Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily.
       0.655
ADU49819.1
Amidase, hydantoinase/carbamoylase family; COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR010158: IPR002933; KEGG: sro:Sros_1779 allantoate amidohydrolase; PFAM: peptidase M20; SPTR: Putative amino acid hydrolase; TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: Peptidase family M20/M25/M40; TIGRFAM: amidase, hydantoinase/carbamoylase family.
       0.491
ADU49818.1
Formiminoglutamate deiminase; COGs: COG0402 Cytosine deaminase and related metal-dependent hydrolase; InterPro IPR010252: IPR006680; KEGG: nml:Namu_0039 formiminoglutamate deiminase; PFAM: amidohydrolase; SPTR: Formiminoglutamate deiminase; TIGRFAM: formiminoglutamate deiminase; PFAM: Amidohydrolase family; TIGRFAM: formiminoglutamate deiminase.
       0.485
hutI
COGs: COG1228 Imidazolonepropionase and related amidohydrolase; InterPro IPR005920: IPR006680; KEGG: bcv:Bcav_1839 imidazolonepropionase; PFAM: amidohydrolase; PRIAM: Imidazolonepropionase; SPTR: Putative chlorohydrolase; TIGRFAM: imidazolonepropionase; PFAM: Amidohydrolase family; TIGRFAM: imidazolonepropionase.
       0.482
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
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