STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU49835.1COGs: COG2808 Transcriptional regulator; InterPro IPR018506: IPR007396: IPR011576; KEGG: cfl:Cfla_0243 FMN-binding negative transcriptional regulator; PFAM: Negative transcriptional regulator; pyridoxamine 5'-phosphate oxidase-related FMN-binding; SPTR: Transcription antitermination factor NusB; PFAM: Putative FMN-binding domain. (207 aa)    
Predicted Functional Partners:
ADU49834.1
COGs: COG2818 3-methyladenine DNA glycosylase; InterPro IPR005019; KEGG: ach:Achl_0015 DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase; PRIAM: DNA-3-methyladenine glycosylase I; SPTR: DNA-3-methyladenine glycosylase I; PFAM: Methyladenine glycosylase; TIGRFAM: DNA-3-methyladenine glycosylase I.
       0.584
ADU49836.1
Phosphoesterase PA-phosphatase related protein; InterPro IPR000326; KEGG: cmi:CMM_0208 putative membrane-associated phospholipid phosphatase; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; SPTR: Putative uncharacterized protein; PFAM: PAP2 superfamily.
       0.566
ADU49728.1
COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; KEGG: nml:Namu_4157 acetyltransferase including N-acetylase of ribosomal protein-like protein; SPTR: Acetyltransferase including N-acetylase of ribosomal protein-like protein.
 
     0.524
ADU49833.1
Membrane-flanked domain; InterPro IPR005182; KEGG: gob:Gobs_4362 membrane-flanked domain protein; PFAM: membrane-flanked domain; SPTR: Membrane-flanked domain protein; PFAM: Bacterial membrane flanked domain.
       0.443
ADU49837.1
Hypothetical protein; COGs: COG2220 Zn-dependent hydrolase of the beta-lactamase fold; KEGG: rha:RHA1_ro05034 hypothetical protein; SPTR: Multidrug resistance protein RomA.
       0.404
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
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