STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU49917.1Hypothetical protein; InterPro IPR006162; KEGG: bbt:BBta_6711 sugar ABC transporter membrane protein; SPTR: Putative uncharacterized protein. (208 aa)    
Predicted Functional Partners:
ADU49916.1
Transcriptional regulator, PadR family; COGs: COG1695 transcriptional regulator protein; InterPro IPR005149; KEGG: ske:Sked_33800 transcriptional regulator, PadR family; PFAM: transcriptional regulator PadR family protein; SPTR: Putative uncharacterized protein; PFAM: Transcriptional regulator PadR-like family.
       0.773
ADU49915.1
DEAD/DEAH box helicase domain protein; COGs: COG4581 Superfamily II RNA helicase; InterPro IPR011545: IPR001650: IPR014021: IPR014001; KEGG: saq:Sare_1716 DEAD/DEAH box helicase domain-containing protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: DEAD/DEAH box helicase domain-containing protein; manually curated; PFAM: Domain of unknown function (DUF3516); Helicase conserved C-terminal domain; DEAD/DEAH box helicase.
       0.610
ADU49918.1
InterPro IPR009597; KEGG: ske:Sked_35130 protein of unknown function (DUF1206); PFAM: protein of unknown function DUF1206; SPTR: Putative uncharacterized protein; PFAM: Domain of Unknown Function (DUF1206).
       0.517
ADU49914.1
Transcriptional regulator, IclR family; COGs: COG1414 Transcriptional regulator; InterPro IPR005471: IPR014757; KEGG: aau:AAur_0332 IclR family transcriptional regulator; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; SPTR: Transcriptional regulator; PFAM: IclR helix-turn-helix domain; Bacterial transcriptional regulator.
       0.475
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
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