STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU49925.1KEGG: hne:HNE_2981 hypothetical protein; SPTR: Membrane protein. (247 aa)    
Predicted Functional Partners:
ADU49924.1
KEGG: tpr:Tpau_2285 hypothetical protein; SPTR: Major facilitator superfamily permease.
       0.709
ADU49926.1
InterPro IPR011701; KEGG: sgr:SGR_619 major facilitator superfamily permease; PFAM: major facilitator superfamily MFS_1; SPTR: Arabinose efflux permease family protein; PFAM: Major Facilitator Superfamily.
       0.583
ADU49923.1
Peptidoglycan-binding lysin domain; InterPro IPR018392: IPR002482; KEGG: pjd:Pjdr2_5940 2',3'-cyclic-nucleotide 2'-phosphodiesterase; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; SPTR: CLV1 receptor kinase; PFAM: LysM domain.
       0.432
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.