STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU49953.1Regulatory protein TetR; InterPro IPR001647; KEGG: nca:Noca_2173 regulatory protein, TetR; PFAM: regulatory protein TetR; SPTR: Regulatory protein, TetR; PFAM: Bacterial regulatory proteins, tetR family. (227 aa)    
Predicted Functional Partners:
ADU49952.1
MmpL domain-containing protein; COGs: COG2409 drug exporter of the RND superfamily; InterPro IPR000731; KEGG: nca:Noca_2172 MmpL domain-containing protein; SPTR: MMPL domain protein; manually curated; PFAM: MMPL family.
 
  
 0.824
ADU49954.1
COGs: COG1573 Uracil-DNA glycosylase; InterPro IPR005122; KEGG: bcv:Bcav_1028 uracil-DNA glycosylase superfamily; PFAM: Uracil-DNA glycosylase superfamily; SPTR: Putative uncharacterized protein; PFAM: Uracil DNA glycosylase superfamily; TIGRFAM: uracil-DNA glycosylase, family 4.
       0.773
ADU49955.1
COGs: COG4122 O-methyltransferase; InterPro IPR002935; KEGG: phe:Phep_0285 O-methyltransferase; PFAM: O-methyltransferase family 3; SPTR: O-methyltransferase; PFAM: O-methyltransferase.
       0.535
ADU49328.1
COGs: COG2409 drug exporter of the RND superfamily; InterPro IPR000731; KEGG: ske:Sked_37220 predicted RND superfamily drug exporter; SPTR: Predicted RND superfamily drug exporter; PFAM: MMPL family.
 
  
 0.424
ADU49958.1
Hypothetical protein; InterPro IPR020311; KEGG: kfl:Kfla_3461 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2630).
 
     0.402
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
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