STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU50008.1Cobalamin synthesis protein P47K; COGs: COG2403 GTPase; InterPro IPR003495; KEGG: ton:TON_1432 hypothetical protein; PFAM: cobalamin synthesis protein P47K; SPTR: Putative uncharacterized protein; PFAM: CobW/HypB/UreG, nucleotide-binding domain. (461 aa)    
Predicted Functional Partners:
ADU50009.1
COGs: COG4992 Ornithine/acetylornithine aminotransferase; InterPro IPR005814: IPR010164: IPR005829; KEGG: gob:Gobs_2808 ornithine aminotransferase; PFAM: aminotransferase class-III; SPTR: RocD1; TIGRFAM: ornithine aminotransferase; PFAM: Aminotransferase class-III; TIGRFAM: ornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.597
ADU47592.1
COGs: COG0549 Carbamate kinase; InterPro IPR001048: IPR003964; KEGG: cai:Caci_1878 carbamate kinase; PFAM: aspartate/glutamate/uridylate kinase; PRIAM: Carbamate kinase; SPTR: Carbamate kinase; PFAM: Amino acid kinase family; TIGRFAM: carbamate kinase; Belongs to the carbamate kinase family.
 
     0.459
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.