OAA98029.1 protein (Streptomyces sp. FXJ1172)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Streptomyces sp. FXJ1172

NCBI taxonomy Id: 710705
Other names: S. sp. FXJ1.172, Streptomyces sp. FXJ1.172

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OAA98027.1	OAA98028.1	A6P39_25025	A6P39_25030	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	WYL domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.700
OAA98027.1	OAA98029.1	A6P39_25025	A6P39_25035	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	WYL domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.692
OAA98027.1	OAA98092.1	A6P39_25025	A6P39_25040	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidyl-prolyl cis-trans isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.599
OAA98028.1	OAA98027.1	A6P39_25030	A6P39_25025	WYL domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.700
OAA98028.1	OAA98029.1	A6P39_25030	A6P39_25035	WYL domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	WYL domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
OAA98028.1	OAA98092.1	A6P39_25030	A6P39_25040	WYL domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidyl-prolyl cis-trans isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.682
OAA98028.1	OAA98266.1	A6P39_25030	A6P39_24475	WYL domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.707
OAA98028.1	OAB02094.1	A6P39_25030	A6P39_03660	WYL domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma-70; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.707
OAA98028.1	rbpA	A6P39_25030	A6P39_17865	WYL domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.	0.752
OAA98028.1	rpoB	A6P39_25030	A6P39_15035	WYL domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.815
OAA98028.1	rpoC	A6P39_25030	A6P39_15030	WYL domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.751
OAA98028.1	rpoZ	A6P39_25030	A6P39_17590	WYL domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.767
OAA98028.1	sigA	A6P39_25030	A6P39_35225	WYL domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.707
OAA98029.1	OAA98027.1	A6P39_25035	A6P39_25025	WYL domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.692
OAA98029.1	OAA98028.1	A6P39_25035	A6P39_25030	WYL domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	WYL domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
OAA98029.1	OAA98092.1	A6P39_25035	A6P39_25040	WYL domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidyl-prolyl cis-trans isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.690
OAA98029.1	OAA98266.1	A6P39_25035	A6P39_24475	WYL domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.707
OAA98029.1	OAB02094.1	A6P39_25035	A6P39_03660	WYL domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma-70; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.707
OAA98029.1	rbpA	A6P39_25035	A6P39_17865	WYL domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.	0.776
OAA98029.1	rpoB	A6P39_25035	A6P39_15035	WYL domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.815