STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EUGRSUZ_L02381RRM domain-containing protein. (70 aa)    
Predicted Functional Partners:
EUGRSUZ_G00770
RRM domain-containing protein.
  
 
 0.629
EUGRSUZ_F00318
RRM domain-containing protein.
  
 
 0.595
EUGRSUZ_G02983
RRM domain-containing protein.
  
 0.537
EUGRSUZ_K01050
RRM domain-containing protein.
    
 0.524
EUGRSUZ_B00046
Uncharacterized protein.
  
   0.524
EUGRSUZ_G03076
Uncharacterized protein.
    
 
 0.520
EUGRSUZ_H02772
Uncharacterized protein.
  
 
 0.504
EUGRSUZ_F03089
Uncharacterized protein.
  
 0.502
EUGRSUZ_K03379
Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.
   
 0.497
EUGRSUZ_D02648
Uncharacterized protein.
  
 
  0.485
Your Current Organism:
Eucalyptus grandis
NCBI taxonomy Id: 71139
Other names: E. grandis, Eucalyptus grandis W.Hill ex Maiden, rose gum
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