STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EUGRSUZ_J00778Uncharacterized protein. (421 aa)    
Predicted Functional Partners:
EUGRSUZ_G00770
RRM domain-containing protein.
  
 
 0.560
EUGRSUZ_F00318
RRM domain-containing protein.
  
 
 0.547
EUGRSUZ_C00155
Sm domain-containing protein.
   
 0.543
EUGRSUZ_K01050
RRM domain-containing protein.
    
 0.524
EUGRSUZ_G03085
S1 motif domain-containing protein.
   
 0.514
EUGRSUZ_F00764
OTU domain-containing protein.
      
 0.507
EUGRSUZ_K03379
Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.
   
 0.497
EUGRSUZ_K00656
Uncharacterized protein.
    
 
 0.476
EUGRSUZ_C02595
Ubiquitin-like domain-containing protein.
      
 0.459
EUGRSUZ_B03469
Urease; In the C-terminal section; belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.
 
  
   0.455
Your Current Organism:
Eucalyptus grandis
NCBI taxonomy Id: 71139
Other names: E. grandis, Eucalyptus grandis W.Hill ex Maiden, rose gum
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