EUGRSUZ_D00328 protein (Eucalyptus grandis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EUGRSUZ_D00328

Uncharacterized protein. (341 aa)

Predicted Functional Partners:

EUGRSUZ_I02226

0.634

EUGRSUZ_K02187

0.620

EUGRSUZ_B02502

0.612

EUGRSUZ_I02620

0.600

EUGRSUZ_A00407

0.600

EUGRSUZ_A00406

0.600

EUGRSUZ_A00408

0.600

EUGRSUZ_B02693

0.583

EUGRSUZ_F04242

0.581

EUGRSUZ_F04156

0.579

Your Current Organism:

Eucalyptus grandis

NCBI taxonomy Id: 71139
Other names: E. grandis, Eucalyptus grandis W.Hill ex Maiden, rose gum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EUGRSUZ_A00406	EUGRSUZ_B02502	A0A059DBR0	A0A059D684	Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.	Uncharacterized protein.	0.738
EUGRSUZ_A00406	EUGRSUZ_B02693	A0A059DBR0	A0A059D714	Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.	Uncharacterized protein.	0.734
EUGRSUZ_A00406	EUGRSUZ_D00328	A0A059DBR0	A0A059CDH5	Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.	Uncharacterized protein.	0.600
EUGRSUZ_A00406	EUGRSUZ_I02226	A0A059DBR0	A0A059ARP3	Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.	Rab proteins geranylgeranyltransferase component; Substrate-binding subunit of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins; Belongs to the Rab GDI family.	0.650
EUGRSUZ_A00407	EUGRSUZ_B02502	A0A059DB98	A0A059D684	Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.	Uncharacterized protein.	0.738
EUGRSUZ_A00407	EUGRSUZ_B02693	A0A059DB98	A0A059D714	Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.	Uncharacterized protein.	0.734
EUGRSUZ_A00407	EUGRSUZ_D00328	A0A059DB98	A0A059CDH5	Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.	Uncharacterized protein.	0.600
EUGRSUZ_A00407	EUGRSUZ_I02226	A0A059DB98	A0A059ARP3	Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.	Rab proteins geranylgeranyltransferase component; Substrate-binding subunit of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins; Belongs to the Rab GDI family.	0.650
EUGRSUZ_A00408	EUGRSUZ_B02502	A0A059DC13	A0A059D684	Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.	Uncharacterized protein.	0.738
EUGRSUZ_A00408	EUGRSUZ_B02693	A0A059DC13	A0A059D714	Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.	Uncharacterized protein.	0.734
EUGRSUZ_A00408	EUGRSUZ_D00328	A0A059DC13	A0A059CDH5	Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.	Uncharacterized protein.	0.600
EUGRSUZ_A00408	EUGRSUZ_I02226	A0A059DC13	A0A059ARP3	Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.	Rab proteins geranylgeranyltransferase component; Substrate-binding subunit of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins; Belongs to the Rab GDI family.	0.650
EUGRSUZ_B02502	EUGRSUZ_A00406	A0A059D684	A0A059DBR0	Uncharacterized protein.	Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.	0.738
EUGRSUZ_B02502	EUGRSUZ_A00407	A0A059D684	A0A059DB98	Uncharacterized protein.	Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.	0.738
EUGRSUZ_B02502	EUGRSUZ_A00408	A0A059D684	A0A059DC13	Uncharacterized protein.	Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.	0.738
EUGRSUZ_B02502	EUGRSUZ_B02693	A0A059D684	A0A059D714	Uncharacterized protein.	Uncharacterized protein.	0.998
EUGRSUZ_B02502	EUGRSUZ_D00328	A0A059D684	A0A059CDH5	Uncharacterized protein.	Uncharacterized protein.	0.612
EUGRSUZ_B02502	EUGRSUZ_I02620	A0A059D684	A0A059ASZ0	Uncharacterized protein.	Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.	0.738
EUGRSUZ_B02693	EUGRSUZ_A00406	A0A059D714	A0A059DBR0	Uncharacterized protein.	Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.	0.734
EUGRSUZ_B02693	EUGRSUZ_A00407	A0A059D714	A0A059DB98	Uncharacterized protein.	Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.	0.734