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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vapCRibonuclease; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (125 aa)    
Predicted Functional Partners:
ALC98412.1
Antitoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.976
ALD00144.1
Addiction module toxin RelE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.505
ALD00145.1
CopG family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.497
ALD00156.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.491
ALC99298.1
Hypothetical protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
 
 
 0.489
ALD00121.1
Antitoxin; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
 
 
 0.461
ALC99041.1
Antitoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.426
Your Current Organism:
Actinomyces
NCBI taxonomy Id: 712122
Other names: A. sp. oral taxon 414, Actinomyces sp. oral taxon 414
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