ALD00561.1 protein (Actinomyces) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ALD00561.1

FMN-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (186 aa)

Predicted Functional Partners:

ALD00559.1

0.885

ALC98926.1

0.761

ALC98924.1

0.704

ALC98927.1

0.682

ALC98925.1

0.637

ALD00560.1

0.629

ALC98928.1

0.627

ALC98929.1

0.523

ALC99945.1

0.485

ALC99946.1

0.455

Your Current Organism:

Actinomyces

NCBI taxonomy Id: 712122
Other names: A. sp. oral taxon 414, Actinomyces sp. oral taxon 414

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALC98924.1	ALC98925.1	AM609_04435	AM609_04440	Iron permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.967
ALC98924.1	ALC98926.1	AM609_04435	AM609_04445	Iron permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.910
ALC98924.1	ALC98927.1	AM609_04435	AM609_04450	Iron permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.870
ALC98924.1	ALC98928.1	AM609_04435	AM609_04460	Iron permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.843
ALC98924.1	ALC99945.1	AM609_04435	AM609_11625	Iron permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.486
ALC98924.1	ALD00559.1	AM609_04435	AM609_04430	Iron permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thiamine biosynthesis protein ApbE; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.	0.679
ALC98924.1	ALD00560.1	AM609_04435	AM609_04455	Iron permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.865
ALC98924.1	ALD00561.1	AM609_04435	AM609_04465	Iron permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	FMN-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.704
ALC98925.1	ALC98924.1	AM609_04440	AM609_04435	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.967
ALC98925.1	ALC98926.1	AM609_04440	AM609_04445	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.923
ALC98925.1	ALC98927.1	AM609_04440	AM609_04450	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.889
ALC98925.1	ALC98928.1	AM609_04440	AM609_04460	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.866
ALC98925.1	ALD00559.1	AM609_04440	AM609_04430	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thiamine biosynthesis protein ApbE; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.	0.560
ALC98925.1	ALD00560.1	AM609_04440	AM609_04455	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.885
ALC98925.1	ALD00561.1	AM609_04440	AM609_04465	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	FMN-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.637
ALC98926.1	ALC98924.1	AM609_04445	AM609_04435	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.910
ALC98926.1	ALC98925.1	AM609_04445	AM609_04440	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.923
ALC98926.1	ALC98927.1	AM609_04445	AM609_04450	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.953
ALC98926.1	ALC98928.1	AM609_04445	AM609_04460	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.947
ALC98926.1	ALD00559.1	AM609_04445	AM609_04430	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thiamine biosynthesis protein ApbE; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.	0.533