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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALC98966.1LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (217 aa)    
Predicted Functional Partners:
ALD00569.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.787
ALC99956.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.681
ALC99175.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.631
ALD00869.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.545
ALD00321.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.510
ALC99571.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.495
ALC99752.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.470
ALC98965.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.467
ALC99472.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.431
ALD00511.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.409
Your Current Organism:
Actinomyces
NCBI taxonomy Id: 712122
Other names: A. sp. oral taxon 414, Actinomyces sp. oral taxon 414
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