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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALC99587.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1240 aa)    
Predicted Functional Partners:
ALC99589.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.789
ALD00683.1
VWA containing CoxE family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.767
ALD00684.1
AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.757
ALC98721.1
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.
  
    0.425
ALC98309.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.423
truA
Hypothetical protein; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
    0.416
ALD00522.1
Biotin-requiring enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.400
Your Current Organism:
Actinomyces
NCBI taxonomy Id: 712122
Other names: A. sp. oral taxon 414, Actinomyces sp. oral taxon 414
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