Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALA94803.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (184 aa)    
Predicted Functional Partners:
ALA96551.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.793
ALA95696.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.611
ALA94802.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.598
ALA94801.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.505
ALA94733.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.498
ALA95015.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.491
ALA95897.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.438
ALA94804.1
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.434
ALA96223.1
CAAX protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.417
Your Current Organism:
Leptotrichia
NCBI taxonomy Id: 712357
Other names: L. sp. oral taxon 212, Leptotrichia sp. oral taxon 212
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