ALA95126.1 protein (Leptotrichia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ALA95126.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (180 aa)

Predicted Functional Partners:

ALA95127.1

0.892

ALA96593.1

0.767

ALA96156.1

0.633

ALA95125.1

0.592

ALA96154.1

0.577

ALA94785.1

0.543

ALA95299.1

0.543

ALA96465.1

0.543

ALA94786.1

0.521

ALA96155.1

0.521

Your Current Organism:

Leptotrichia

NCBI taxonomy Id: 712357
Other names: L. sp. oral taxon 212, Leptotrichia sp. oral taxon 212

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALA94785.1	ALA94786.1	AMK43_00825	AMK43_00830	Cobalt ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobalt ABC transporter ATPase; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.	0.998
ALA94785.1	ALA95126.1	AMK43_00825	AMK43_02905	Cobalt ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.543
ALA94785.1	ALA96154.1	AMK43_00825	AMK43_09165	Cobalt ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.725
ALA94785.1	ALA96155.1	AMK43_00825	AMK43_09170	Cobalt ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.665
ALA94786.1	ALA94785.1	AMK43_00830	AMK43_00825	Cobalt ABC transporter ATPase; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.	Cobalt ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
ALA94786.1	ALA95126.1	AMK43_00830	AMK43_02905	Cobalt ABC transporter ATPase; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.521
ALA94786.1	ALA95127.1	AMK43_00830	AMK43_02915	Cobalt ABC transporter ATPase; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.669
ALA94786.1	ALA95299.1	AMK43_00830	AMK43_03965	Cobalt ABC transporter ATPase; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.665
ALA94786.1	ALA96156.1	AMK43_00830	AMK43_09175	Cobalt ABC transporter ATPase; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.	Cobalt transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.716
ALA94786.1	ALA96465.1	AMK43_00830	AMK43_11005	Cobalt ABC transporter ATPase; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.	Cobalt transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.665
ALA95125.1	ALA95126.1	AMK43_02900	AMK43_02905	Cytidine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.592
ALA95126.1	ALA94785.1	AMK43_02905	AMK43_00825	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobalt ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.543
ALA95126.1	ALA94786.1	AMK43_02905	AMK43_00830	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobalt ABC transporter ATPase; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.	0.521
ALA95126.1	ALA95125.1	AMK43_02905	AMK43_02900	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytidine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.592
ALA95126.1	ALA95127.1	AMK43_02905	AMK43_02915	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.892
ALA95126.1	ALA95299.1	AMK43_02905	AMK43_03965	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.543
ALA95126.1	ALA96154.1	AMK43_02905	AMK43_09165	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.577
ALA95126.1	ALA96155.1	AMK43_02905	AMK43_09170	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.521
ALA95126.1	ALA96156.1	AMK43_02905	AMK43_09175	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobalt transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.633
ALA95126.1	ALA96465.1	AMK43_02905	AMK43_11005	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobalt transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.543