Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
ANR69850.1Six-cysteine peptide SCIFF; Derived by automated computational analysis using gene prediction method: Protein Homology. (45 aa)    
Predicted Functional Partners:
ANR69849.1
Thioether cross-link-forming SCIFF peptide maturase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.968
ANR69546.1
Radical SAM/SPASM domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.851
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
       0.605
ANR69852.1
SpoIVB peptidase S55 domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.558
ANR71625.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.440
AXF19_04850
SAM-dependent methyltransferase; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.436
Your Current Organism:
Selenomonas
NCBI taxonomy Id: 712528
Other names: S. sp. oral taxon 126, Selenomonas sp. oral taxon 126
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