Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ANR69868.1Addiction module toxin RelE; Derived by automated computational analysis using gene prediction method: Protein Homology. (90 aa)    
Predicted Functional Partners:
ANR69869.1
Toxin-antitoxin system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.935
AXF19_02350
L-lactate dehydrogenase; Frameshifted; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.726
ANR71232.1
Damage-inducible protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.633
AXF19_12430
Terminase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.629
ANR71279.1
Damage-inducible protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.625
ANR71860.1
Toxin-antitoxin system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.612
ANR71835.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.601
ANR71834.1
XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.598
ANR69931.1
Damage-inducible protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.562
ANR69600.1
DNA-damage-inducible protein J; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.559
Your Current Organism:
Selenomonas
NCBI taxonomy Id: 712528
Other names: S. sp. oral taxon 126, Selenomonas sp. oral taxon 126
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