Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AXF19_02350L-lactate dehydrogenase; Frameshifted; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology. (91 aa)    
Predicted Functional Partners:
ANR69949.1
Addiction module toxin RelE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.940
ANR71696.1
Addiction module toxin RelE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.793
ANR69932.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.731
ANR69868.1
Addiction module toxin RelE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.726
ANR70052.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.712
ANR71231.1
Addiction module toxin RelE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.705
ANR71278.1
Addiction module toxin RelE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.705
ANR69700.1
Addiction module toxin RelE; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.607
AXF19_01495
Methyltransferase; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.607
ANR70631.1
Plasmid stabilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.607
Your Current Organism:
Selenomonas
NCBI taxonomy Id: 712528
Other names: S. sp. oral taxon 126, Selenomonas sp. oral taxon 126
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