Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AXF19_06485Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1170 aa)    
Predicted Functional Partners:
ANR70659.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
ANR71298.1
Phage head-tail adapter protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.723
ANR71297.1
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.720
ANR70359.1
6-phospho-beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 1 family.
   
   0.712
ANR70130.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.536
ANR70133.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
   0.536
ANR71294.1
Phage portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.536
ANR71296.1
Capsid protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.536
ANR69648.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
   0.468
ANR69841.1
Glutathione reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.468
Your Current Organism:
Selenomonas
NCBI taxonomy Id: 712528
Other names: S. sp. oral taxon 126, Selenomonas sp. oral taxon 126
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