Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
AXF19_07200RNA polymerase subunit sigma; Involved in the initiation of sporulation and glycogen biosynthesis; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology. (532 aa)    
Predicted Functional Partners:
ANR70788.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.781
ANR70483.1
Flagellar protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.712
ANR71885.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.671
ANR70769.1
Flagellar motor switch protein FliM; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.664
ANR71783.1
Chemotaxis protein CheX; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.638
fliW
Flagellar assembly protein FliW; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum.
 
     0.637
ANR70803.1
Flagellar assembly protein FliH; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.606
ANR71893.1
Flagellar protein FlbD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.600
ANR71215.1
Flagellar hook-length control protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.578
AXF19_01220
Dihydroxyacetone kinase subunit L; Frameshifted; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.577
Your Current Organism:
Selenomonas
NCBI taxonomy Id: 712528
Other names: S. sp. oral taxon 126, Selenomonas sp. oral taxon 126
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