Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AXF19_09830Transposase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (523 aa)    
Predicted Functional Partners:
ANR71281.1
Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.782
ANR71920.1
DNA methylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the N(4)/N(6)-methyltransferase family.
 
  
 0.776
ANR71925.1
Holin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.708
ANR71233.1
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.701
ANR71238.1
Virulence protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.699
ANR71285.1
Virulence protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.695
ANR71280.1
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.686
ANR71270.1
DUF4406 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.671
ANR71296.1
Capsid protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.670
ANR70124.1
Toxin Bro; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.666
Your Current Organism:
Selenomonas
NCBI taxonomy Id: 712528
Other names: S. sp. oral taxon 126, Selenomonas sp. oral taxon 126
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