Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ANR71252.1Competence protein ComM; Derived by automated computational analysis using gene prediction method: Protein Homology. (57 aa)    
Predicted Functional Partners:
ANR69606.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.523
ANR69985.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.523
ANR71734.1
AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.523
ANR71251.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.477
ANR71816.1
Cobaltochelatase subunit CobN; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.441
ANR71572.1
Pyruvate:ferredoxin (flavodoxin) oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.420
ANR71365.1
DNA protecting protein DprA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.410
Your Current Organism:
Selenomonas
NCBI taxonomy Id: 712528
Other names: S. sp. oral taxon 126, Selenomonas sp. oral taxon 126
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