STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AME04268.1Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (413 aa)    
Predicted Functional Partners:
AME04270.1
General secretion pathway protein GspF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.998
AME04269.1
Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.851
AME04135.1
Peptidase A24; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.798
truA
Pseudouridine synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
       0.782
AME02700.1
Competence protein ComEA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.781
ecfT
Transporter; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
       0.744
AME04134.1
General secretion pathway protein GspG; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.742
AME04138.1
Prepilin-type cleavage/methylation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.726
AME04236.1
Pilus assembly protein PilQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.681
AME02684.1
Single-stranded DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.576
Your Current Organism:
Selenomonas
NCBI taxonomy Id: 713030
Other names: S. sp. oral taxon 136, Selenomonas sp. oral taxon 136
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.