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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHE97311.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (184 aa)    
Predicted Functional Partners:
AHE97310.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.957
AHE97309.1
alpha-L-glutamate ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.954
AHE97308.1
Amino acid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.566
AHE99875.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.566
lpxL
Lipid A biosynthesis acyltransferase; Catalyzes the transfer of laurate from lauroyl-acyl carrier protein (ACP) to Kdo(2)-lipid IV(A) to form Kdo(2)-(lauroyl)-lipid IV(A).
       0.507
Your Current Organism:
Thioalkalivibrio paradoxus
NCBI taxonomy Id: 713585
Other names: T. paradoxus ARh 1, Thioalkalivibrio paradoxus ARh 1, Thioalkalivibrio paradoxus str. ARh 1, Thioalkalivibrio paradoxus strain ARh 1
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