close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHE97470.1DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (96 aa)    
Predicted Functional Partners:
AHE97467.1
DNA polymerase III subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.809
AHE97722.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.764
AHE97466.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.730
AHE99906.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.598
AHE97471.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.533
AHE97723.1
Nucleotidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.515
AHE97469.1
Toxin-antitoxin system antitoxin subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.489
AHE97468.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.485
AHE97814.1
CopG family transcripitonal regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.453
Your Current Organism:
Thioalkalivibrio paradoxus
NCBI taxonomy Id: 713585
Other names: T. paradoxus ARh 1, Thioalkalivibrio paradoxus ARh 1, Thioalkalivibrio paradoxus str. ARh 1, Thioalkalivibrio paradoxus strain ARh 1
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.