STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_00095COG1396 Predicted transcriptional regulators. (383 aa)    
Predicted Functional Partners:
RAM_00075
COG1396 Predicted transcriptional regulators.
 
   
 0.660
RAM_00600
Hypothetical protein; COG0500 SAM-dependent methyltransferases.
  
     0.597
RAM_09155
Hypothetical protein.
  
     0.573
RAM_40685
GCN5-related N-acetyltransferase; COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
  
    0.506
RAM_45015
COG1396 Predicted transcriptional regulators.
 
   
 0.468
ActV
Polyketide cyclase/dehydratase; COG2867 Oligoketide cyclase/lipid transport protein.
  
     0.436
RAM_00595
COG0438 Glycosyltransferase.
  
     0.434
RAM_31655
Hypothetical protein.
  
     0.430
RAM_01005
COG1396 Predicted transcriptional regulators.
  
     0.428
RAM_33450
COG1846 Transcriptional regulators.
  
 
   0.427
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.