STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_00100NTPase-like protein probably invoved in signal transduction; COG5635 Predicted NTPase (NACHT family). (1102 aa)    
Predicted Functional Partners:
RAM_04635
Hypothetical protein.
  
     0.502
RAM_18250
PAS domain-containing sensor protein; COG2202 FOG: PAS/PAC domain.
 
     0.502
RAM_20410
Hypothetical protein.
  
     0.497
RAM_16790
COG1309 Transcriptional regulator.
  
     0.467
RAM_13830
Hypothetical protein; COG1073 Hydrolases of the alpha/beta superfamily.
 
     0.440
RAM_18845
Transposase.
 
     0.440
Gpm
Phosphoglycerate mutase; COG0406 Fructose-2,6-bisphosphatase.
  
     0.436
RAM_37885
Secreted esterase.
  
     0.419
RAM_24665
ATPase; COG0464 ATPases of the AAA+ class.
 
     0.414
RAM_35565
Hypothetical protein; COG1404 Subtilisin-like serine proteases.
  
     0.411
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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