STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_00115Hypothetical protein; COG2812 DNA polymerase III, gamma/tau subunits. (393 aa)    
Predicted Functional Partners:
RAM_39035
Hypothetical protein.
  
     0.714
RAM_39040
Hypothetical protein.
  
     0.700
RAM_41110
Hypothetical protein.
  
     0.688
RAM_22520
Hypothetical protein.
  
     0.660
RAM_34695
COG4331 Predicted membrane protein.
  
     0.605
RAM_01265
COG2055 Malate/L-lactate dehydrogenases; Belongs to the LDH2/MDH2 oxidoreductase family.
  
     0.546
RAM_11355
Hypothetical protein.
  
     0.508
RAM_19370
IS4 family transposase; COG3293 Transposase and inactivated derivatives.
  
     0.483
RAM_23035
IS4 family transposase; COG3293 Transposase and inactivated derivatives.
  
     0.477
RAM_29715
IS4 family transposase; COG3293 Transposase and inactivated derivatives.
  
     0.477
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.