STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_00130COG0842 ABC-type multidrug transport system, permease component. (247 aa)    
Predicted Functional Partners:
RAM_00125
COG1131 ABC-type multidrug transport system, ATPase component.
 
   
 0.948
RAM_01210
COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component.
  
 
 0.916
RAM_44740
COG1131 ABC-type multidrug transport system, ATPase component.
 
   
 0.771
RAM_23955
COG1131 ABC-type multidrug transport system, ATPase component.
 
   
 0.770
RAM_30410
COG1131 ABC-type multidrug transport system, ATPase component.
 
   
 0.770
RAM_20575
COG1131 ABC-type multidrug transport system, ATPase component.
 
   
 0.769
RAM_10395
COG1131 ABC-type multidrug transport system, ATPase component.
 
   
 0.766
RAM_39165
COG1131 ABC-type multidrug transport system, ATPase component.
 
   
 0.765
RAM_42385
COG1131 ABC-type multidrug transport system, ATPase component.
 
   
 0.576
Glf
COG0562 UDP-galactopyranose mutase.
  
  
 0.563
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.