STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_00145Esterase/lipase-like protein; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily). (465 aa)    
Predicted Functional Partners:
RAM_01315
Hypothetical protein.
  
     0.614
PdxH
COG0259 Pyridoxamine-phosphate oxidase.
       0.605
RAM_00155
Hypothetical protein.
       0.605
RAM_17420
Hypothetical protein; COG0480 Translation elongation factors (GTPases).
  
     0.524
RAM_05610
alpha-L-rhamnosidase.
  
    0.498
RAM_30675
Two-component system histidine kinase.
  
     0.495
RAM_01435
COG3584 Uncharacterized protein conserved in bacteria.
  
     0.488
RAM_33140
Beta-lactamase class B; COG0491 Zn-dependent hydrolases, including glyoxylases.
  
    0.458
RAM_40010
Hypothetical protein.
  
     0.451
RAM_37780
SGNH hydrolase containing a LamG-like domain; COG3209 Rhs family protein.
  
     0.437
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.