STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_00200Hypothetical protein. (51 aa)    
Predicted Functional Partners:
SrtA
COG3764 Sortase (surface protein transpeptidase).
 
   
 0.912
crgA
Putative septation inhibitor protein; Involved in cell division; Belongs to the CrgA family.
       0.617
RAM_07990
Chromosome segregation-related protein.
  
     0.531
RAM_13110
Ribonuclease BN; COG1295 Predicted membrane protein.
  
     0.489
RAM_00185
Hypothetical protein.
 
     0.487
RAM_13790
Hypothetical protein.
  
     0.467
RAM_33780
Hypothetical protein.
  
     0.452
RAM_12620
Hypothetical protein.
  
     0.449
RAM_33975
Hypothetical protein; COG0295 Cytidine deaminase.
  
     0.445
RAM_45445
Peptide hydrolase; COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases.
  
     0.422
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.