STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_00205Hypothetical protein. (130 aa)    
Predicted Functional Partners:
CooC
Putative ATP-binding protein; COG3640 CO dehydrogenase maturation factor.
 
     0.839
RAM_46350
Transcriptional regulator.
  
     0.568
RAM_46355
Hypothetical protein; COG1396 Predicted transcriptional regulators.
  
     0.547
RAM_46555
Hypothetical protein.
  
     0.545
RAM_00210
COG0842 ABC-type multidrug transport system, permease component.
       0.527
RAM_00215
COG1131 ABC-type multidrug transport system, ATPase component.
       0.527
RAM_34780
Hypothetical protein.
  
     0.514
RAM_02040
Hypothetical protein; COG3315 O-Methyltransferase involved in polyketide biosynthesis.
  
     0.505
RAM_29985
Hypothetical protein.
  
     0.504
RAM_46360
Hypothetical protein.
  
     0.500
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.