STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_00215COG1131 ABC-type multidrug transport system, ATPase component. (237 aa)    
Predicted Functional Partners:
RAM_00210
COG0842 ABC-type multidrug transport system, permease component.
 
  
 0.948
RAM_15395
COG0842 ABC-type multidrug transport system, permease component.
 
  
 0.654
RAM_24740
COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
 
   
 0.607
RAM_42390
COG0842 ABC-type multidrug transport system, permease component.
 
  
 0.596
RAM_39170
COG0842 ABC-type multidrug transport system, permease component.
 
  
 0.565
RAM_44745
COG0842 ABC-type multidrug transport system, permease component.
 
  
 0.541
RAM_00205
Hypothetical protein.
       0.527
RAM_23960
COG0842 ABC-type multidrug transport system, permease component.
 
  
 0.519
RAM_00225
COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
  
    0.515
RAM_00220
COG3851 Signal transduction histidine kinase, glucose-6-phosphate specific.
       0.514
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.