STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_00240COG4152 ABC-type uncharacterized transport system, ATPase component. (263 aa)    
Predicted Functional Partners:
RAM_00245
Hypothetical protein.
 
    0.894
PabA
COG0512 Anthranilate/para-aminobenzoate synthases component II.
  
  
 0.787
RAM_24740
COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
 
   
 0.766
RAM_46410
COG1132 ABC-type multidrug transport system, ATPase and permease components.
 
 0.635
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
   0.629
DnaK-2
Molecular chaperone DnaK; COG4249 Uncharacterized protein containing caspase domain; Belongs to the heat shock protein 70 family.
 
   0.600
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
  
     0.595
RAM_46405
COG1132 ABC-type multidrug transport system, ATPase and permease components.
 
 0.577
RAM_25605
COG1132 ABC-type multidrug transport system, ATPase and permease components.
 
 0.556
ThrS
COG0441 Threonyl-tRNA synthetase.
  
     0.548
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.