STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_00245Hypothetical protein. (213 aa)    
Predicted Functional Partners:
RAM_00240
COG4152 ABC-type uncharacterized transport system, ATPase component.
 
    0.895
PabA
COG0512 Anthranilate/para-aminobenzoate synthases component II.
  
  
 0.799
RAM_04590
Hypothetical protein.
  
     0.722
RAM_42395
Lysozyme M1 precursor; COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase).
  
     0.719
RAM_29910
Hypothetical protein.
  
     0.690
RAM_47730
Hypothetical protein.
  
     0.677
RAM_14190
Hypothetical protein.
 
 
   0.660
RAM_47415
Peptidase; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
     0.655
Fpr
ferredoxin--NADP+ reductase; COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases.
 
    0.628
RAM_17065
Hypothetical protein.
  
     0.623
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.