STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_00255COG0515 Serine/threonine protein kinase. (658 aa)    
Predicted Functional Partners:
RAM_00275
COG0631 Serine/threonine protein phosphatase.
 
 
 0.985
RAM_00280
FHA domain-containing protein; COG1716 FOG: FHA domain.
 
 
 
 0.978
RAM_25405
FHA domain-containing protein; COG1716 FOG: FHA domain.
 
 
 
 0.944
RAM_45875
COG0631 Serine/threonine protein phosphatase.
 
 
 0.937
RAM_00285
FHA domain-containing protein; COG1716 FOG: FHA domain.
 
 
 
 0.934
RAM_18985
COG0631 Serine/threonine protein phosphatase.
 
 
 0.934
RAM_00260
COG0515 Serine/threonine protein kinase.
 
 
0.928
FtsW
COG0772 Bacterial cell division membrane protein; Belongs to the SEDS family.
  
 
 0.914
RAM_00265
Peptidoglycan glycosyl transferase; COG0768 Cell division protein FtsI/penicillin-binding protein 2.
  
  
 0.901
RAM_22185
FHA domain-containing protein; COG1716 FOG: FHA domain.
 
 
 
 0.828
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.